Survival-associated meQTLs across different cancer types
We identified 23,432 meQTLs associated with patient overall survival across different cancer types at FDR < 0.05.
|
Cancer type
|
SNP ID
|
SNP position (hg19)
|
Alleles (A/a)
|
log-rank test p-value
|
Sample size
|
Median survival time AA
|
Median survival time Aa
|
Median survival time aa
|
|
|---|---|---|---|---|---|---|---|---|---|
| SKCM | rs1796697 | chr6:8551171 | C/T | 1.53E-6 | 101 | 14.9 | 15.57 | 10.17 | KM Plot |
| SKCM | rs1935565 | chr1:96363908 | C/T | 3.5E-5 | 100 | 9 | 11.17 | 15.55 | KM Plot |
| SKCM | rs2007182 | chr19:48686072 | G/A | 6.73E-5 | 101 | 15.38 | 14.8 | 11.73 | KM Plot |
| SKCM | rs2007183 | chr19:48686098 | G/T | 6.73E-5 | 101 | 15.38 | 14.8 | 11.73 | KM Plot |
| SKCM | rs2007184 | chr19:48686145 | G/T | 6.73E-5 | 101 | 15.38 | 14.8 | 11.73 | KM Plot |
| SKCM | rs200817394 | chr15:52055303 | TA/AA | 2.23E-5 | 101 | 14.9 | 13.07 | 9 | KM Plot |
| SKCM | rs2013042 | chr12:63394211 | A/G | 2.4E-7 | 100 | 15.13 | 14.3 | 8.8 | KM Plot |
| SKCM | rs2013050 | chr12:63394310 | C/T | 2.4E-7 | 100 | 15.13 | 14.3 | 8.8 | KM Plot |
| SKCM | rs201523778 | chr7:56399596 | TA/T | 6.97E-8 | 96 | 15.3 | 14.3 | 8.6 | KM Plot |
| SKCM | rs202213330 | chr6:100044805 | AT/A | 0 | 99 | 14.75 | 15.37 | 6.33 | KM Plot |
| SKCM | rs2055038 | chr12:53355955 | G/A | 4.59E-5 | 101 | 16.58 | 12.68 | 13 | KM Plot |
| SKCM | rs20579 | chr19:48668830 | G/A | 6.73E-5 | 101 | 15.38 | 14.8 | 11.73 | KM Plot |
| SKCM | rs2112799 | chr19:56161206 | C/T | 4.91E-6 | 98 | 13.9 | 22.38 | 9 | KM Plot |
| SKCM | rs2283567 | chr16:89849977 | A/C | 3.06E-5 | 98 | 15.52 | 14.15 | 8.77 | KM Plot |
| SKCM | rs2286614 | chr11:64068310 | C/T | 1.39E-10 | 98 | 14.8 | 19.85 | 6.83 | KM Plot |